rstoolbox 1.0.0
  • Scripts
  • Tutorial
  • API
  • Site
      • An introduction to rstoolbox
      • Highlighted works
      • Installing and Getting Started
      • Available direct executables
      • Tutorials
      • API reference
      • RosettaScripts
      • What’s new
      • Contributing
  • Page
      • Tutorials
        • Basics
        • Pipeline Examples

Tutorials¶

Basics¶

  • Installing and Getting Started
  • Global configuration options
  • Reading Rosetta outputs
  • RosettaScripts
  • API reference

Pipeline Examples¶

  • Sequence Analysis
    • Loading a Reference
    • Loading the Design Data
    • Population Overview
    • Sorting and Selecting
    • Identification of Mutants
    • Visual Analysis of Mutations
  • Structural Analysis
    • Loading a Reference
    • Loading the Design Data
    • Select by Structural Properties
    • Visualise Structural Data
  • Working with Fragments
    • Loading Fragments
    • Fragments Quality Measure
    • Plotting Fragments
  • Compare Decoy Populations
    • Merging Populations
      • The two populations should share column names
      • There must be a column to identify to which population each decoy belongs
    • Comparing Basic Scores
    • Sequence Distances
  • Generation of New Variants
    • Loading a Reference
    • Loading the Design Data
    • Minimal Mutant
    • Defining New Mutations of Interest
    • Exhaustive Point Mutant Sampling
    • Learning from Amino Acids Frequency
    • Creating the New Mutants
  • Experimental Data
    • Circular Dichroism
    • Thermal Melt
    • Multi-Angle Light Scattering
    • Surface Plasmon Resonance
    • Deep Sequence Analysis and Population Enrichment
  • Contextualize your Data
    • Pre-calculated datasets
    • Cleaning your own background sets
    • Distribution in context
    • Selections in context
    • Each selection in its context

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© Copyright 2018, Jaume Bonet.
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