rstoolbox.plot.plot_alignment¶

rstoolbox.plot.plot_alignment(df, seqID, ax, line_break=None, matrix=None)¶

Make an image representing the alignment of sequences with higlights to mutant positions.

Parameters:

df (Union[DesignFrame, SequenceFrame]) – Data container. seqID (str) – Identifier of the sequence of interest. ax (Union[Axes, list() of Axes]) – Where to plot the heatmap. If a list of axis is provided, it assumes that one wants to split the alignment in that many pieces. line_break (int) – Set a line break after x residues. To execute that, multiple axes must be provided. matrix (str) – Identifier of the matrix used to evaluate similarity. Default is None highlight differences.

Raises:

ValueError: if input is not a DataFrame derived object. KeyError: if reference sequence is requested but the data container does not have one. KeyError: if there is no reference_sequence for chain seqID of the decoys.