rstoolbox.io.write_mutant_alignments¶

rstoolbox.io.write_mutant_alignments(df, seqID, filename=None)¶

Writes a text file containing only the positions changed with respect to the reference_sequence.

The format will be CLUSTALW but residues that repeat the reference_sequence are substituted by “.”.

Parameters:	df (Union[DesignFrame, DataFrame]) – Data content. seqID (str) – Identifier of the sequence of interest. filename (str) – Output file name.
Returns:	str - CLUSTALW formated string.
Raises:	IOError: If filename exists and global option system.overwrite is not True. AttributeError: if there is no sequence information for chain seqID of the decoys.

Note

Depends on system.overwrite and system.output.