rstoolbox.io.write_fragment_sequence_profiles¶

rstoolbox.io.write_fragment_sequence_profiles(df, filename=None, consensus=None)¶

Write a sequence profile from FragmentFrame to load into Rosetta’s SeqprofConsensus.

Format mimicks as much as possible BLAST PSSM.

Parameters:	df (Union[FragmentFrame, DataFrame]) – Fragments from which to create the matrix or the matrix itself. filename (str) – Output file name. consensus (str) – Consensus sequence to show.
Returns:	str - the expected file content if filename is None.
Raises:	IOError: if filename exists and system.overwrite is False. ValueError: if consensus lenth differs from the expected by the given fragments.